Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34).
Identifieur interne : 004229 ( Main/Exploration ); précédent : 004228; suivant : 004230Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34).
Auteurs : Benoit Van Aken [États-Unis] ; Caroline M. Peres [États-Unis] ; Sharon Lafferty Doty [États-Unis] ; Jong Moon Yoon [États-Unis] ; Jerald L. Schnoor [États-Unis]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5026 ] ; 2004.
Descripteurs français
- KwdFr :
- ADN bactérien (composition chimique), ADN bactérien (isolement et purification), ADN ribosomique (composition chimique), ARN bactérien (génétique), ARN ribosomique 16S (génétique), Analyse de séquence d'ADN (MeSH), Aérobiose (MeSH), Données de séquences moléculaires (MeSH), Gènes d'ARN ribosomique (MeSH), Methylobacterium (classification), Methylobacterium (cytologie), Methylobacterium (isolement et purification), Methylobacterium (physiologie), Méthane (métabolisme), Phylogenèse (MeSH), Pigments biologiques (biosynthèse), Populus (microbiologie), Similitude de séquences (MeSH), Techniques de typage bactérien (MeSH).
- MESH :
- biosynthèse : Pigments biologiques.
- composition chimique : ADN bactérien, ADN ribosomique, Methylobacterium.
- cytologie : Methylobacterium.
- génétique : ARN bactérien, ARN ribosomique 16S.
- isolement et purification : ADN bactérien, Methylobacterium.
- microbiologie : Populus.
- métabolisme : Méthane.
- physiologie : Methylobacterium.
- Analyse de séquence d'ADN, Aérobiose, Données de séquences moléculaires, Gènes d'ARN ribosomique, Phylogenèse, Similitude de séquences, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Aerobiosis (MeSH), Bacterial Typing Techniques (MeSH), DNA, Bacterial (chemistry), DNA, Bacterial (isolation & purification), DNA, Ribosomal (chemistry), Genes, rRNA (MeSH), Methane (metabolism), Methylobacterium (classification), Methylobacterium (cytology), Methylobacterium (isolation & purification), Methylobacterium (physiology), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Pigments, Biological (biosynthesis), Populus (microbiology), RNA, Bacterial (genetics), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology (MeSH).
- MESH :
- chemical , biosynthesis : Pigments, Biological.
- chemical , chemistry : DNA, Bacterial, DNA, Ribosomal.
- chemical , genetics : RNA, Bacterial, RNA, Ribosomal, 16S.
- chemical , isolation & purification : DNA, Bacterial.
- chemical , metabolism : Methane.
- classification : Methylobacterium.
- cytology : Methylobacterium.
- isolation & purification : Methylobacterium.
- microbiology : Populus.
- physiology : Methylobacterium.
- Aerobiosis, Bacterial Typing Techniques, Genes, rRNA, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Sequence Homology.
Abstract
A pink-pigmented, aerobic, facultatively methylotrophic bacterium, strain BJ001T, was isolated from internal poplar tissues (Populus deltoidesxnigra DN34) and identified as a member of the genus Methylobacterium. Phylogenetic analyses showed that strain BJ001T is related to Methylobacterium thiocyanatum, Methylobacterium extorquens, Methylobacterium zatmanii and Methylobacterium rhodesianum. However, strain BJ001T differed from these species in its carbon-source utilization pattern, particularly its use of methane as the sole source of carbon and energy, an ability that is shared with only one other member of the genus, Methylobacterium organophilum. In addition, strain BJ001T is the only member of the genus Methylobacterium to be described as an endophyte of poplar trees. On the basis of its physiological, genotypic and ecological properties, the isolate is proposed as a member of a novel species of the genus Methylobacterium, Methylobacterium populi sp. nov. (type strain, BJ001T=ATCC BAA-705T=NCIMB 13946T).
DOI: 10.1099/ijs.0.02796-0
PubMed: 15280290
Affiliations:
- États-Unis
- Iowa, Washington (État)
- Iowa City, Seattle
- Université de Washington, Université de l'Iowa
Links toward previous steps (curation, corpus...)
Le document en format XML
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(MeSH)</term><term>Aérobiose (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Gènes d'ARN ribosomique (MeSH)</term><term>Methylobacterium (classification)</term><term>Methylobacterium (cytologie)</term><term>Methylobacterium (isolement et purification)</term><term>Methylobacterium (physiologie)</term><term>Méthane (métabolisme)</term><term>Phylogenèse (MeSH)</term><term>Pigments biologiques (biosynthèse)</term><term>Populus (microbiologie)</term><term>Similitude de séquences (MeSH)</term><term>Techniques de typage bactérien (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Pigments, Biological</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Bacterial</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>DNA, Bacterial</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Methane</term></keywords><keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Pigments biologiques</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Methylobacterium</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN bactérien</term><term>ADN ribosomique</term><term>Methylobacterium</term></keywords><keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Methylobacterium</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Methylobacterium</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN bactérien</term><term>ARN ribosomique 16S</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Methylobacterium</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>ADN bactérien</term><term>Methylobacterium</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Méthane</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Methylobacterium</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Methylobacterium</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Aerobiosis</term><term>Bacterial Typing Techniques</term><term>Genes, rRNA</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term><term>Sequence Homology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Aérobiose</term><term>Données de séquences moléculaires</term><term>Gènes d'ARN ribosomique</term><term>Phylogenèse</term><term>Similitude de séquences</term><term>Techniques de typage bactérien</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A pink-pigmented, aerobic, facultatively methylotrophic bacterium, strain BJ001T, was isolated from internal poplar tissues (Populus deltoidesxnigra DN34) and identified as a member of the genus Methylobacterium. Phylogenetic analyses showed that strain BJ001T is related to Methylobacterium thiocyanatum, Methylobacterium extorquens, Methylobacterium zatmanii and Methylobacterium rhodesianum. However, strain BJ001T differed from these species in its carbon-source utilization pattern, particularly its use of methane as the sole source of carbon and energy, an ability that is shared with only one other member of the genus, Methylobacterium organophilum. In addition, strain BJ001T is the only member of the genus Methylobacterium to be described as an endophyte of poplar trees. On the basis of its physiological, genotypic and ecological properties, the isolate is proposed as a member of a novel species of the genus Methylobacterium, Methylobacterium populi sp. nov. (type strain, BJ001T=ATCC BAA-705T=NCIMB 13946T).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15280290</PMID><DateCompleted><Year>2005</Year><Month>02</Month><Day>18</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>16</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">1466-5026</ISSN><JournalIssue CitedMedium="Print"><Volume>54</Volume><Issue>Pt 4</Issue><PubDate><Year>2004</Year><Month>Jul</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle>Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34).</ArticleTitle><Pagination><MedlinePgn>1191-1196</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.02796-0</ELocationID><Abstract><AbstractText>A pink-pigmented, aerobic, facultatively methylotrophic bacterium, strain BJ001T, was isolated from internal poplar tissues (Populus deltoidesxnigra DN34) and identified as a member of the genus Methylobacterium. Phylogenetic analyses showed that strain BJ001T is related to Methylobacterium thiocyanatum, Methylobacterium extorquens, Methylobacterium zatmanii and Methylobacterium rhodesianum. However, strain BJ001T differed from these species in its carbon-source utilization pattern, particularly its use of methane as the sole source of carbon and energy, an ability that is shared with only one other member of the genus, Methylobacterium organophilum. In addition, strain BJ001T is the only member of the genus Methylobacterium to be described as an endophyte of poplar trees. On the basis of its physiological, genotypic and ecological properties, the isolate is proposed as a member of a novel species of the genus Methylobacterium, Methylobacterium populi sp. nov. (type strain, BJ001T=ATCC BAA-705T=NCIMB 13946T).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Van Aken</LastName><ForeName>Benoit</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Civil and Environmental Engineering, University of Iowa, 4105 Seamans Center, Iowa City, IA 52242, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peres</LastName><ForeName>Caroline M</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Department of Microbiology, University of Iowa, 3-432 Bowen Science Building, Iowa City, IA 52242, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Doty</LastName><ForeName>Sharon Lafferty</ForeName><Initials>SL</Initials><AffiliationInfo><Affiliation>Department of Biochemistry, Box 357350, University of Washington, Seattle, WA 98195, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yoon</LastName><ForeName>Jong Moon</ForeName><Initials>JM</Initials><AffiliationInfo><Affiliation>Department of Civil and Environmental Engineering, University of Iowa, 4105 Seamans Center, Iowa City, IA 52242, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schnoor</LastName><ForeName>Jerald L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Department of Civil and Environmental Engineering, University of Iowa, 4105 Seamans Center, Iowa City, IA 52242, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AY251818</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010860">Pigments, Biological</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012329">RNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>OP0UW79H66</RegistryNumber><NameOfSubstance UI="D008697">Methane</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="CommentIn"><RefSource>Int J Syst Evol Microbiol. 2004 Nov;54(Pt 6):1919-20</RefSource><PMID Version="1">15545410</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D000332" MajorTopicYN="N">Aerobiosis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020459" MajorTopicYN="N">Genes, rRNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008697" MajorTopicYN="N">Methane</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020580" MajorTopicYN="N">Methylobacterium</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010860" MajorTopicYN="N">Pigments, Biological</DescriptorName><QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012329" MajorTopicYN="N">RNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017385" MajorTopicYN="N">Sequence Homology</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2004</Year><Month>7</Month><Day>29</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2005</Year><Month>2</Month><Day>19</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2004</Year><Month>7</Month><Day>29</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">15280290</ArticleId><ArticleId IdType="doi">10.1099/ijs.0.02796-0</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Iowa</li><li>Washington (État)</li></region><settlement><li>Iowa City</li><li>Seattle</li></settlement><orgName><li>Université de Washington</li><li>Université de l'Iowa</li></orgName></list><tree><country name="États-Unis"><region name="Iowa"><name sortKey="Van Aken, Benoit" sort="Van Aken, Benoit" uniqKey="Van Aken B" first="Benoit" last="Van Aken">Benoit Van Aken</name></region><name sortKey="Doty, Sharon Lafferty" sort="Doty, Sharon Lafferty" uniqKey="Doty S" first="Sharon Lafferty" last="Doty">Sharon Lafferty Doty</name><name sortKey="Peres, Caroline M" sort="Peres, Caroline M" uniqKey="Peres C" first="Caroline M" last="Peres">Caroline M. Peres</name><name sortKey="Schnoor, Jerald L" sort="Schnoor, Jerald L" uniqKey="Schnoor J" first="Jerald L" last="Schnoor">Jerald L. Schnoor</name><name sortKey="Yoon, Jong Moon" sort="Yoon, Jong Moon" uniqKey="Yoon J" first="Jong Moon" last="Yoon">Jong Moon Yoon</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 004229 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 004229 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:15280290
|texte= Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34).
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:15280290" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |